SNP Report

Basic Info
Name rs130005 dbSNP Ensembl
Location chr16:3778347 - 3778347(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.109625
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000635753, ENST00000636002); intron_variant(ENST00000262367, ENST00000382070, ENST00000570939, ENST00000572134, ENST00000634839); non_coding_transcript_variant(ENST00000634839); upstream_gene_variant(ENST00000571826, ENST00000575237)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Crisafulli, C.,2012 A/G Association analysis: genotype P-value = 0.75, chi square=1....... Association analysis: genotype P-value = 0.75, chi square=1.95; allele P-value = 0.63, chi square=0.92 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CREBBP CREB binding protein 16p13.3 1(0/1/0)

SNPs in LD with rs130005 (count: 3) View in gBrowse (chr16:3778347..3874936 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Crisafulli, C.,2012 Association analysis:genotype P-value = >0.05;allele P-value > 0.05 No significant association was observed in MDD. Negative