BDgene

SNP Report

Basic Info
Name rs12998006 dbSNP Ensembl
Location chr2:210804282 - 210804282(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.199681
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 T/C NIMH/Pritzker: OR (95% CI)=1.27(1.07-1.5), P-value = 0.0061;...... NIMH/Pritzker: OR (95% CI)=1.27(1.07-1.5), P-value = 0.0061; GSK(complete sample): OR (95% CI)=1.42(1.21-1.66), P-value = 0.000013; 2-study meta-analysis: OR (95% CI)=1.35(1.2-1.51), P-value = 0.00000076; Heterogeneity: I2%=0, P-value = 0.33 More... Trend

SNP related genes (count: 0)

SNPs in LD with rs12998006 (count: 2) View in gBrowse (chr2:210804282..210808686 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016