SNP Report

Basic Info

Name	rs1279210 dbSNP Ensembl
Location	chr14:32982779 - 32982779(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.323682
Functional Annotation	intron_variant.
Consequence to Transcript	intron_variant(ENST00000346562, ENST00000356141, ENST00000357798, ENST00000548645, ENST00000551492, ENST00000551634)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pickard, B. S.,2009	A/G		Alelle association: P-value = 0.8502 Alelle association: P-value = 0.8502	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NPAS3	neuronal PAS domain protein 3	14q13.1	2(1/1/0)

SNPs in LD with rs1279210 (count: 3) View in gBrowse (chr14:32979912..32991395 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs1296274	intron_variant	0.953[CEU]
rs1279205	intron_variant	1.0[CEU]
rs1296875	intron_variant	0.811[CEU]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Pickard, B. S.,2009	Alelle association:P-value = 0.972	No significant association was observed	Negative

Overlap with MDD from cross-disorder studies (count: 0)