SNP Report

Basic Info
Name rs12754 dbSNP Ensembl
Location chr7:45721595 - 45721595(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.19349
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000297323); downstream_gene_variant(ENST00000338231, ENST00000413357, ENST00000428414, ENST00000429741, ENST00000444755)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/C C Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.007, Gene-wide P-value = 0.1099 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ADCY1 adenylate cyclase 1 (brain) 7p12.3 Mapped by Literature SNP
SEPT7P2 septin 7 pseudogene 2 7p12.3 Mapped by Literature SNP

SNPs in LD with rs12754 (count: 7) View in gBrowse (chr7:45698202..45761447 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)