SNP Report

Basic Info
Name rs1273394 dbSNP Ensembl
Location chr16:8719430 - 8719430(1)
Variant Alleles G/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.284944
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000563215); intron_variant(ENST00000268251, ENST00000396600, ENST00000561870, ENST00000563992, ENST00000564714, ENST00000565016, ENST00000566590, ENST00000567812, ENST00000568847); NMD_transcript_variant(ENST00000566590); non_coding_transcript_variant(ENST00000563992); upstream_gene_variant(ENST00000425191, ENST00000562115, ENST00000569156)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/C A Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0345, Gene-wide P-value = 0.6224 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ABAT 4-aminobutyrate aminotransferase 16p13.2 Mapped by Literature SNP

SNPs in LD with rs1273394 (count: 0) View in gBrowse (chr16:8719430..8719430 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)