SNP Report

Basic Info

Name	rs1273394 dbSNP Ensembl
Location	chr16:8719430 - 8719430(1)
Variant Alleles	G/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.284944
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000563215); intron_variant(ENST00000268251, ENST00000396600, ENST00000561870, ENST00000563992, ENST00000564714, ENST00000565016, ENST00000566590, ENST00000567812, ENST00000568847); NMD_transcript_variant(ENST00000566590); non_coding_transcript_variant(ENST00000563992); upstream_gene_variant(ENST00000425191, ENST00000562115, ENST00000569156)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2008 (b)	A/C	A	Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0345, Gene-wide P-value = 0.6224 (P values were based on permutation for all SNPs in each gene). More...		Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ABAT	4-aminobutyrate aminotransferase	16p13.2	Mapped by Literature SNP

SNPs in LD with rs1273394 (count: 0) View in gBrowse (chr16:8719430..8719430 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)