SNP Report

Basic Info
Name rs1269713 dbSNP Ensembl
Location chr8:102024839 - 102024839(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.221645
Functional Annotation intron_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000311028, ENST00000395923, ENST00000517531, ENST00000517639, ENST00000517822, ENST00000518166, ENST00000518952, ENST00000521599, ENST00000521964, ENST00000522078, ENST00000522206, ENST00000523923, ENST00000524209); non_coding_transcript_variant(ENST00000517639, ENST00000518952); upstream_gene_variant(ENST00000518661)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 P(unadj)-value=0.000684, OR (unadj)=0.7701, P(adj)-value=0...... P(unadj)-value=0.000684, OR (unadj)=0.7701, P(adj)-value=0.001242, OR(adj)=0.7762 More... Listing suggestive significant genic SNPs for combined Toron...... Listing suggestive significant genic SNPs for combined Toronto and London GWAS for which there are 4 or more suggestive significant SNPs among the top 1000, and for which no other positive reports have been published to date. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NCALD neurocalcin delta 8q22.3 1(0/1/0)

SNPs in LD with rs1269713 (count: 6) View in gBrowse (chr8:102016061..102026695 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 6)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)