BDgene

SNP Report

Basic Info
Name rs12568099 dbSNP Ensembl
Location chr1:198781293 - 198781293(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.0658946
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 T/C NIMH/Pritzker: OR (95% CI)=1.48(0.90-2.42), P-value = 0.12; ...... NIMH/Pritzker: OR (95% CI)=1.48(0.90-2.42), P-value = 0.12; GSK(reduced sample): OR (95% CI)=2.17(1.26-3.77), P-value = 0.0054; WTCCC: OR (95% CI)=1.49(1.20-1.85), P-value = 0.00031; 3-study meta-analysis: OR (95% CI)=1.56(1.28-1.9), P-value = 0.0000098; Heterogeneity: I2%=0, P-value = 0.44 More... Trend

SNP related genes (count: 0)

SNPs in LD with rs12568099 (count: 7) View in gBrowse (chr1:198725813..198818768 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)