BDgene

SNP Report

Basic Info
Name rs1240083 dbSNP Ensembl
Location chr8:89051573 - 89051573(1)
Variant Alleles A/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.277756
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Li, J.,2011(b) A/G Third-Stage Sample: for BPD, allele association P-value = 0....... Third-Stage Sample: for BPD, allele association P-value = 0.91, OR(95%CI)=0.99(0.85-1.16) More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
BCL9 B-cell CLL/lymphoma 9 1q21 1(1/0/0)

SNPs in LD with rs1240083 (count: 33) View in gBrowse (chr8:88994967..89059924 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 33)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Li, J.,2011(b) Third-Stage Sample:for SZ, allele association P-value = 0.09, OR(95%CI)=0.87(0.74-1.02);Combined Third-Stage Sample, allele association P-value = 0.000152, OR(98%CI)=0.86(0.79-0.93) No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Li, J.,2011(b) Third-Stage Sample:for MDD, allele association P-value = 0.63, OR(95%CI)=0.96(0.82-1.13) No significant association was observed. Negative

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016