SNP Report

Basic Info

Name	rs1222938 dbSNP Ensembl
Location	chr18:52414796 - 52414796(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.316693
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000316512); intron_variant(ENST00000442544)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kuo, P. H., 2014			P-value=0.04746,Â OR=0.8, 95%CI=0.6-0.99 for the second stag...... P-value=0.04746,Â OR=0.8, 95%CI=0.6-0.99 for the second stage More...	The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
DCC	DCC netrin 1 receptor	18q21.1	2(1/1/0)

SNPs in LD with rs1222938 (count: 10) View in gBrowse (chr18:52393914..52414796 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs3862683	intron_variant; upstream_gene_variant	0.857[JPT]
rs9948092	intron_variant; upstream_gene_variant	1.0[CHB]; 1.0[JPT]
rs3862681	intron_variant; upstream_gene_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs8094822	intron_variant	0.955[CHB]; 0.974[CHD]; 1.0[JPT]
rs3851129	intron_variant; upstream_gene_variant	0.953[CHB]; 0.952[JPT]
rs3851127	intron_variant; upstream_gene_variant	1.0[CHB]; 0.952[JPT]
rs1789666	downstream_gene_variant; intron_variant	1.0[CHB]; 1.0[JPT]
rs3862682	intron_variant; upstream_gene_variant	0.955[CHB]; 0.952[JPT]
rs3862680	intron_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs3862679	intron_variant	1.0[CHB]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)