BDgene

SNP Report

Basic Info
Name rs1222938 dbSNP Ensembl
Location chr18:52414796 - 52414796(1)
Variant Alleles G/A
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.316693
Functional Annotation downstream_gene_variant; intron_variant.
Consequence to Transcript downstream_gene_variant(ENST00000316512); intron_variant(ENST00000442544)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kuo, P. H., 2014 P-value=0.04746, OR=0.8, 95%CI=0.6-0.99 for the second stag...... P-value=0.04746, OR=0.8, 95%CI=0.6-0.99 for the second stage More... The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DCC DCC netrin 1 receptor 18q21.1 2(1/1/0)

SNPs in LD with rs1222938 (count: 10) View in gBrowse (chr18:52393914..52414796 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)