BDgene

SNP Report

Basic Info
Name rs12154715 dbSNP Ensembl
Location chr7:158935219 - 158935219(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.120407
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000407559, ENST00000444851, ENST00000454771, ENST00000467220); NMD_transcript_variant(ENST00000444851, ENST00000454771); non_coding_transcript_variant(ENST00000467220)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Xu, W., 2014 P(unadj)-value=0.00015, OR (unadj)=1.411, P(adj)-value=0.0...... P(unadj)-value=0.00015, OR (unadj)=1.411, P(adj)-value=0.000261, OR(adj)=1.402 More... Listing suggestive significant genic SNPs for combined Toron...... Listing suggestive significant genic SNPs for combined Toronto and London GWAS for which there are 4 or more suggestive significant SNPs among the top 1000, and for which no other positive reports have been published to date. More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
WDR60 WD repeat domain 60 7q36.3 1(0/1/0)

SNPs in LD with rs12154715 (count: 9) View in gBrowse (chr7:158919112..158957655 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016