BDgene

SNP Report

Basic Info
Name rs11711888 dbSNP Ensembl
Location chr3:62171537 - 62171537(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele G
Minor Allele Frequence 0.00519169
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000295874, ENST00000474889)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Scott, L. J.,2009 A/G NIMH/Pritzker: OR (95% CI)=3.31(1.84-5.96), P-value = 0.0000...... NIMH/Pritzker: OR (95% CI)=3.31(1.84-5.96), P-value = 0.000067; GSK(complete sample): OR (95% CI)=2.2(1.24-3.91), P-value = 0.0071; 2-study meta-analysis: OR (95% CI)=2.69(1.77-4.08), P-value = 0.0000035; Heterogeneity: I2%=0, P-value = 0.33 More... Trend

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PTPRG protein tyrosine phosphatase, receptor type, G 3p21-p14 Mapped by Literature SNP

SNPs in LD with rs11711888 (count: 0) View in gBrowse (chr3:62171537..62171537 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016