BDgene

SNP Report

Basic Info
Name rs11652429 dbSNP Ensembl
Location chr17:34180578 - 34180578(1)
Variant Alleles G/C
Ancestral Allele G
Minor Allele C
Minor Allele Frequence 0.295527
Functional Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000579438); intron_variant(ENST00000566930, ENST00000580792, ENST00000584724); non_coding_transcript_variant(ENST00000566930, ENST00000580792, ENST00000584724)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Djurovic, S.,2010 Combined analysis: for TOP Norway (discovery sample): P-valu...... Combined analysis: for TOP Norway (discovery sample): P-value = 0.000294, OR=1.61 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
CCL2 chemokine (C-C motif) ligand 2 17q11.2-q21.1 3(1/2/0)

SNPs in LD with rs11652429 (count: 1) View in gBrowse (chr17:34180578..34182521 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 1)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)