BDgene

SNP Report

Basic Info
Name rs11617266 dbSNP Ensembl
Location chr13:42196560 - 42196560(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.157748
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000261491, ENST00000337343, ENST00000379274, ENST00000498255, ENST00000536612, ENST00000626247, ENST00000627777, ENST00000628433); NMD_transcript_variant(ENST00000626247, ENST00000627777); non_coding_transcript_variant(ENST00000498255)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Tesli, M.,2009 Single marker association: MAF=0.24, HWE=0.52, P-value(MAX t...... Single marker association: MAF=0.24, HWE=0.52, P-value(MAX test)=0.67 More... No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DGKH diacylglycerol kinase, eta 13q13.3 6(3/3/0)

SNPs in LD with rs11617266 (count: 8) View in gBrowse (chr13:42185117..42215230 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 8)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016