SNP Report

Basic Info
Name rs11600996 dbSNP Ensembl
Location chr11:13374619 - 13374619(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.34345
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000497429, ENST00000534102); intron_variant(ENST00000389707, ENST00000401424, ENST00000403290, ENST00000403482, ENST00000403510, ENST00000524392, ENST00000529390); NMD_transcript_variant(ENST00000524392); non_coding_transcript_variant(ENST00000529390); upstream_gene_variant(ENST00000472842)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Dmitrzak-Weglarz, M. P., 2014 T/C MD (BPD and UPD): P-value=0.0071, FDR=0.1492, OR=0.81, 95%CI...... MD (BPD and UPD): P-value=0.0071, FDR=0.1492, OR=0.81, 95%CI=0.69-0.94; BPD: P-value=0.0028, FDR=0.0636, OR=0.77, 95%CI=0.65-0.92; BPDI: P-value=0.0193, FDR=0.4056, OR=0.80, 95%CI=0.67-0.97; BPDII: P-value=0.0070, FDR=0.1035, OR=0.67, 95%CI=0.50-0.90. More... Significant predictive value was observed. Significant predictive value was observed. Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ARNTL aryl hydrocarbon receptor nuclear translocator-like 11p15 7(5/2/0)

SNPs in LD with rs11600996 (count: 0) View in gBrowse (chr11:13374619..13374619 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)