SNP Report

Basic Info

Name	rs11600996 dbSNP Ensembl
Location	chr11:13374619 - 13374619(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	C
Minor Allele Frequence	0.34345
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000497429, ENST00000534102); intron_variant(ENST00000389707, ENST00000401424, ENST00000403290, ENST00000403482, ENST00000403510, ENST00000524392, ENST00000529390); NMD_transcript_variant(ENST00000524392); non_coding_transcript_variant(ENST00000529390); upstream_gene_variant(ENST00000472842)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Dmitrzak-Weglarz, M. P., 2014	T/C		MD (BPD and UPD): P-value=0.0071, FDR=0.1492, OR=0.81, 95%CI...... MD (BPD and UPD): P-value=0.0071, FDR=0.1492, OR=0.81, 95%CI=0.69-0.94; BPD: P-value=0.0028, FDR=0.0636, OR=0.77, 95%CI=0.65-0.92; BPDI: P-value=0.0193, FDR=0.4056, OR=0.80, 95%CI=0.67-0.97; BPDII: P-value=0.0070, FDR=0.1035, OR=0.67, 95%CI=0.50-0.90. More...	Significant predictive value was observed. Significant predictive value was observed.	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ARNTL	aryl hydrocarbon receptor nuclear translocator-like	11p15	7(5/2/0)

SNPs in LD with rs11600996 (count: 0) View in gBrowse (chr11:13374619..13374619 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)