SNP Report

Basic Info

Name	rs11564767 dbSNP Ensembl
Location	chrCHR_HSCHR5_3_CTG1:1427718 - 1427718(-1)
Variant Alleles	A/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.165136
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000270349); upstream_gene_variant(ENST00000512002, ENST00000621716)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Mick, E., 2008		T	TDT X²(df=1)=0.02, P-value = 0.999, OR (95% CI)=1...... TDT X²(df=1)=0.02, P-value = 0.999, OR (95% CI)=1(0.55-1.83) More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLC6A3	solute carrier family 6 (neurotransmitter transporter), member 3	5p15.3	11(5/6/0)

SNPs in LD with rs11564767 (count: 5) View in gBrowse (chrCHR_HSCHR5_3_CTG1:1426386..1427874 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs11133768	intron_variant; upstream_gene_variant	0.825[CEU]
rs11564765	intron_variant; upstream_gene_variant	0.849[CEU]
rs6869645	intron_variant; upstream_gene_variant	0.825[CEU]
rs11564764	intron_variant; upstream_gene_variant	0.848[CEU]
rs6876225	intron_variant; upstream_gene_variant	0.849[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)