SNP Report

Basic Info
Name |
rs1148247
dbSNP
Ensembl
|
Location |
chr10:35208018 - 35208018(1) |
Variant Alleles |
G/A |
Ancestral Allele |
G |
Minor Allele |
A |
Minor Allele Frequence |
0.289337 |
Functional Annotation |
downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
|
Consequence to Transcript |
downstream_gene_variant(ENST00000466251, ENST00000494479); intron_variant(ENST00000337656, ENST00000342105, ENST00000344351, ENST00000345491, ENST00000348787, ENST00000354759, ENST00000356917, ENST00000361599, ENST00000374721, ENST00000374728, ENST00000374734, ENST00000395887, ENST00000429130, ENST00000439705, ENST00000460270, ENST00000461968, ENST00000463314, ENST00000463960, ENST00000464475, ENST00000468236, ENST00000469517, ENST00000473940, ENST00000474362, ENST00000474931, ENST00000479070, ENST00000484283, ENST00000487132, ENST00000487763, ENST00000488328, ENST00000488741, ENST00000490460, ENST00000490511, ENST00000495960); NMD_transcript_variant(ENST00000464475, ENST00000490460, ENST00000495960); non_coding_transcript_variant(ENST00000461968, ENST00000469517); upstream_gene_variant(ENST00000602435) |
No. of Studies |
1 (Positive: 0; Negative: 1; Trend: 0) |
Source |
Literature |
Overlap with SZ? |
NO
|
Overlap with MDD? |
YES
|

SNP related studies (count: 1)

SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 1)

rs_ID |
Literature-origin SNPs with LD |
Functional Annotation |
r2[population] |
rs12184386
|
|
intron_variant; NMD_transcript_variant |
0.802[JPT]
|

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 1)
Reference |
Statistical Result |
Description |
Result Category |
Crisafulli, C.,2012 |
Association analysis:genotype P-value = >0.05;allele P-value > 0.05 |
No significant association was observed in MDD. |
Negative
|