SNP Report

Basic Info
Name rs1143685 dbSNP Ensembl
Location chr16:81786163 - 81786163(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.266773
Functional Annotation non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant.
Consequence to Transcript non_coding_transcript_exon_variant(ENST00000567980, ENST00000569929); non_coding_transcript_variant(ENST00000567980, ENST00000569929); synonymous_variant(ENST00000359376, ENST00000564138, ENST00000565054, LRG_376t1)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ollila, H. M.,2009 C/T FBAT: P-value = 0.779841 FBAT: P-value = 0.779841 No significant association was observed No significant association was observed Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PLCG2 phospholipase C, gamma 2 (phosphatidylinositol-specific) 16q24.1 1(0/1/0)

SNPs in LD with rs1143685 (count: 0) View in gBrowse (chr16:81786163..81786163 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)