SNP Report

Basic Info

Name	rs1143685 dbSNP Ensembl
Location	chr16:81786163 - 81786163(1)
Variant Alleles	T/C
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.266773
Functional Annotation	non_coding_transcript_exon_variant; non_coding_transcript_variant; synonymous_variant.
Consequence to Transcript	non_coding_transcript_exon_variant(ENST00000567980, ENST00000569929); non_coding_transcript_variant(ENST00000567980, ENST00000569929); synonymous_variant(ENST00000359376, ENST00000564138, ENST00000565054, LRG_376t1)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ollila, H. M.,2009	C/T		FBAT: P-value = 0.779841 FBAT: P-value = 0.779841	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PLCG2	phospholipase C, gamma 2 (phosphatidylinositol-specific)	16q24.1	1(0/1/0)

SNPs in LD with rs1143685 (count: 0) View in gBrowse (chr16:81786163..81786163 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)