SNP Report

Basic Info

Name	rs11065501 dbSNP Ensembl
Location	chr12:121234167 - 121234167(1)
Variant Alleles	C/G
Ancestral Allele	C
Minor Allele	G
Minor Allele Frequence	0.241214
Functional Annotation	downstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000324774, ENST00000337174, ENST00000337233, ENST00000347034, ENST00000359949, ENST00000392474, ENST00000499638, ENST00000538417, ENST00000538733, ENST00000541187, ENST00000542067, ENST00000543171, ENST00000543318, ENST00000543430, ENST00000543984, ENST00000545538)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
McQuillin, A.,2009			Allelic Association: X²=0.213, P-value = 0.644 Allelic Association: X²=0.213, P-value = 0.644	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
P2RX4	purinergic receptor P2X, ligand gated ion channel, 4	12q24.32	1(0/1/0)
CAMKK2	calcium/calmodulin-dependent protein kinase kinase 2, beta	12q24.2	2(1/1/0)

SNPs in LD with rs11065501 (count: 4) View in gBrowse (chr12:121234167..121250441 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs12823779	downstream_gene_variant; intron_variant	0.868[CEU]
rs11065504	downstream_gene_variant; intron_variant	0.954[CEU]
rs3794207	downstream_gene_variant; intron_variant	1.0[CEU]
rs12819431	downstream_gene_variant; intron_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)