BDgene

SNP Report

Basic Info
Name rs11065501 dbSNP Ensembl
Location chr12:121234167 - 121234167(1)
Variant Alleles C/G
Ancestral Allele C
Minor Allele G
Minor Allele Frequence 0.241214
Functional Annotation downstream_gene_variant.
Consequence to Transcript downstream_gene_variant(ENST00000324774, ENST00000337174, ENST00000337233, ENST00000347034, ENST00000359949, ENST00000392474, ENST00000499638, ENST00000538417, ENST00000538733, ENST00000541187, ENST00000542067, ENST00000543171, ENST00000543318, ENST00000543430, ENST00000543984, ENST00000545538)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
McQuillin, A.,2009 Allelic Association: X2=0.213, P-value = 0.644 Allelic Association: X2=0.213, P-value = 0.644 No significant association was observed No significant association was observed Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
P2RX4 purinergic receptor P2X, ligand gated ion channel, 4 12q24.32 1(0/1/0)
CAMKK2 calcium/calmodulin-dependent protein kinase kinase 2, beta 12q24.2 2(1/1/0)

SNPs in LD with rs11065501 (count: 4) View in gBrowse (chr12:121234167..121250441 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)