SNP Report

Basic Info
Name rs11001178 dbSNP Ensembl
Location chrCHR_HG2191_PATCH:74844104 - 74844104(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.446286
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000287239, ENST00000372711, ENST00000372714, ENST00000372724, ENST00000372725, ENST00000604130); non_coding_transcript_variant(ENST00000604130, ENST00000627572, ENST00000628038, ENST00000628523, ENST00000629233, ENST00000629879, ENST00000630001, ENST00000627572)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kuo, P. H., 2014 P-value=0.00075, OR=0.6, 95%CI=0.5-0.8 for the second stage...... P-value=0.00075, OR=0.6, 95%CI=0.5-0.8 for the second stage, combined P-value=0.02 for the replication stage. More... The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
KAT6B K(lysine) acetyltransferase 6B 10q22.2 1(1/0/0)

SNPs in LD with rs11001178 (count: 20) View in gBrowse (chrCHR_HG2191_PATCH:74773136..74896880 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 20)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)