SNP Report

Basic Info

Name	rs10914367 dbSNP Ensembl
Location	chr1:31373359 - 31373359(1)
Variant Alleles	A/G
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.291534
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000482018); upstream_gene_variant(ENST00000373713, ENST00000497275, ENST00000498148)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Iwayama, Y., 2010	T/C		allele test P-value = 0.4973, genotype test P-value = 0.7251 allele test P-value = 0.4973, genotype test P-value = 0.7251	None of the 8 SNPs showed association with bipolar disorder None of the 8 SNPs showed association with bipolar disorder	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
FABP3	fatty acid binding protein 3, muscle and heart	1p33-p32	2(1/1/0)

SNPs in LD with rs10914367 (count: 23) View in gBrowse (chr1:31233789..31413316 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 23)

rs_ID	Functional Annotation	r²[population]
rs4949388	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs10914372		0.86[CHB]; 0.865[CHD]
rs756352	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7539952	intron_variant; non_coding_transcript_variant	0.903[CHB]; 1.0[JPT]
rs6425730	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.903[CHB]; 0.931[CHD]; 1.0[JPT]
rs924930	downstream_gene_variant	0.903[CHB]; 0.931[CHD]; 1.0[JPT]
rs10753248	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs2889753		0.809[CHB]
rs12401792	intron_variant; upstream_gene_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs4949203	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs7549339		0.839[CHB]; 0.929[CHD]; 1.0[JPT]
rs3753373	downstream_gene_variant; intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.903[CHB]; 0.929[CHD]; 0.953[JPT]
rs1532858	downstream_gene_variant; intron_variant; upstream_gene_variant	0.903[CHB]; 1.0[JPT]
rs10914350	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs12566574	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.903[CHB]; 1.0[JPT]
rs905929		0.859[CHB]
rs12026718	intron_variant	0.808[CHB]; 0.863[CHD]; 0.909[JPT]
rs2377728	intron_variant	0.808[CHB]; 0.882[CHD]; 0.953[JPT]
rs12042883	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.817[CHB]
rs12564155	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs6425741	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs6425742	downstream_gene_variant; intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[JPT]
rs7533667	intron_variant; non_coding_transcript_variant	1.0[CHB]; 1.0[CHD]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Iwayama, Y., 2010	allele test P-value = 0.7429, genotype test P-value = 0.6223	None of the 8 SNPs showed association with schizophrenia.	Negative

Overlap with MDD from cross-disorder studies (count: 0)