SNP Report

Basic Info
Name rs1060041 dbSNP Ensembl
Location chr1:168004738 - 168004738(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.167931
Functional Annotation NMD_transcript_variant; synonymous_variant.
Consequence to Transcript NMD_transcript_variant(ENST00000470721); synonymous_variant(ENST00000312263, ENST00000367840, ENST00000367843, ENST00000432587, ENST00000470721)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saito T., 2014 T/C First-set screening: P-valuecorrected=1, P-value=...... First-set screening: P-valuecorrected=1, P-value=0.749, OR=1.03, 95%CI=0.85-1.25 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DCAF6 DDB1 and CUL4 associated factor 6 1q23.3 1(0/1/0)

SNPs in LD with rs1060041 (count: 7) View in gBrowse (chr1:167917264..168049602 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saito T., 2014 First-set screening: P-valuecorrected=1, P-value=0.0481, OR=1.21, 95%CI=1.00-1.46 Significant association was observed. Positive

Overlap with MDD from cross-disorder studies (count: 0)