SNP Report
Basic Info
| Name |
rs10494251
dbSNP
Ensembl
|
| Location |
chr1:147552120 - 147552120(1) |
| Variant Alleles |
C/T |
| Ancestral Allele |
C |
| Minor Allele |
T |
| Minor Allele Frequence |
0.0878594 |
| Functional Annotation |
intron_variant.
|
| Consequence to Transcript |
intron_variant(ENST00000234739) |
| No. of Studies |
1 (Positive: 0; Negative: 1; Trend: 0) |
| Source |
Literature |
| Overlap with SZ? |
YES
|
|---|
| Overlap with MDD? |
YES
|
|---|
SNP related studies (count: 1)
SNP related genes (count: 1)
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.
Literature-origin SNPs (count: 0)
LD-proxies (count: 10)
Overlap with SZ from cross-disorder studies (count: 1)
| Reference |
Statistical Result |
Description |
Result Category |
| Li, J.,2011(b) |
Third-Stage Sample:for SZ, allele association P-value = 0.53, OR(95%CI)=0.95(0.83-1.1);Combined Third-Stage Sample, allele association P-value = 0.02, OR(98%CI)=0.92(0.86-0.99) |
Significant association was observed in SZ. |
Positive |
Overlap with MDD from cross-disorder studies (count: 1)
| Reference |
Statistical Result |
Description |
Result Category |
| Li, J.,2011(b) |
Third-Stage Sample:for MDD, allele association P-value = 0.04, OR(95%CI)=0.86(0.75-0.99) |
Significant association was observed in MDD. |
Positive
|
