SNP Report

Basic Info
Name rs10489202 dbSNP Ensembl
Location chr1:167933841 - 167933841(1)
Variant Alleles G/T
Ancestral Allele G
Minor Allele T
Minor Allele Frequence 0.167332
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000271373, ENST00000367846, ENST00000458574); upstream_gene_variant(ENST00000312263, ENST00000367840, ENST00000367843, ENST00000432587, ENST00000450548, ENST00000455334, ENST00000470721, ENST00000470919)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Saito T., 2014 T/G First-set screening: P-valuecorrected=1, P-value=...... First-set screening: P-valuecorrected=1, P-value=0.901, OR=1.01, 95%CI=0.83-1.23 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
DCAF6 DDB1 and CUL4 associated factor 6 1q23.3 1(0/1/0)
MPC2 mitochondrial pyruvate carrier 2 1q24 1(0/1/0)

SNPs in LD with rs10489202 (count: 7) View in gBrowse (chr1:167917264..168049602 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 7)

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Saito T., 2014 First-set screening: P-valuecorrected=1, P-value=0.0267, OR=1.24, 95%CI=1.02-1.49 Significant association was observed. Positive

Overlap with MDD from cross-disorder studies (count: 0)