BDgene

SNP Report

Basic Info
Name rs10482616 dbSNP Ensembl
Location chr5:143402002 - 143402002(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.193291
Functional Annotation intron_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000231509, ENST00000343796, ENST00000394464, ENST00000394466, ENST00000415690, ENST00000502892, ENST00000503201, ENST00000504572, ENST00000508760, ENST00000510170, ENST00000514699); upstream_gene_variant(ENST00000424646, ENST00000502500, ENST00000623204)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Ceulemans, S.,2011 A/G Single SNP analyses: Permuted P-value = 0.2036, Odds Ratio=1...... Single SNP analyses: Permuted P-value = 0.2036, Odds Ratio=1.317 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NR3C1 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) 5q31-q32 5(2/3/0)

SNPs in LD with rs10482616 (count: 0) View in gBrowse (chr5:143402002..143402002 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)