SNP Report

Basic Info

Name	rs10482616 dbSNP Ensembl
Location	chr5:143402002 - 143402002(1)
Variant Alleles	C/T
Ancestral Allele	C
Minor Allele	T
Minor Allele Frequence	0.193291
Functional Annotation	intron_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000231509, ENST00000343796, ENST00000394464, ENST00000394466, ENST00000415690, ENST00000502892, ENST00000503201, ENST00000504572, ENST00000508760, ENST00000510170, ENST00000514699); upstream_gene_variant(ENST00000424646, ENST00000502500, ENST00000623204)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Ceulemans, S.,2011	A/G		Single SNP analyses: Permuted P-value = 0.2036, Odds Ratio=1...... Single SNP analyses: Permuted P-value = 0.2036, Odds Ratio=1.317 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NR3C1	nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	5q31-q32	5(2/3/0)

SNPs in LD with rs10482616 (count: 0) View in gBrowse (chr5:143402002..143402002 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)