SNP Report

Basic Info
Name rs1044317 dbSNP Ensembl
Location chr21:42296791 - 42296791(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.414537
Functional Annotation 3_prime_UTR_variant; downstream_gene_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant.
Consequence to Transcript 3_prime_UTR_variant(ENST00000343687, ENST00000347800, ENST00000361802, ENST00000398437, ENST00000398449, ENST00000398457); downstream_gene_variant(ENST00000496783); non_coding_transcript_exon_variant(ENST00000462050, ENST00000472587); non_coding_transcript_variant(ENST00000462050, ENST00000472587)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kirov, G.,2001 Association analysis: TDT P-value = 0.3 Association analysis: TDT P-value = 0.3 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ABCG1 ATP-binding cassette, sub-family G (WHITE), member 1 21q22.3 1(0/1/0)

SNPs in LD with rs1044317 (count: 2) View in gBrowse (chr21:42295912..42298373 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)