SNP Report

Basic Info

Name	rs1042009 dbSNP Ensembl
Location	chr7:45664372 - 45664372(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.472644
Functional Annotation	intron_variant; synonymous_variant.
Consequence to Transcript	intron_variant(ENST00000297323); synonymous_variant(ENST00000432715, ENST00000621543)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2008 (b)	A/G	G	Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0122, Gene-wide P-value = 0.0829 (P values were based on permutation for all SNPs in each gene). More...		Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ADCY1	adenylate cyclase 1 (brain)	7p12.3	Mapped by Literature SNP

SNPs in LD with rs1042009 (count: 2) View in gBrowse (chr7:45663899..45669805 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs2461110		intron_variant	0.896[CEU]; 0.953[TSI]
rs2471264		intron_variant	0.948[CEU]; 0.93[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)