SNP Report

Basic Info
Name rs1042009 dbSNP Ensembl
Location chr7:45664372 - 45664372(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.472644
Functional Annotation intron_variant; synonymous_variant.
Consequence to Transcript intron_variant(ENST00000297323); synonymous_variant(ENST00000432715, ENST00000621543)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Shi, J., 2008 (b) A/G G Allelic association of neurotransmission systems genes with ...... Allelic association of neurotransmission systems genes with bipolar disorder: TDT P-value = 0.0122, Gene-wide P-value = 0.0829 (P values were based on permutation for all SNPs in each gene). More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ADCY1 adenylate cyclase 1 (brain) 7p12.3 Mapped by Literature SNP

SNPs in LD with rs1042009 (count: 2) View in gBrowse (chr7:45663899..45669805 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)