SNP Report

Basic Info

Name	rs10082479 dbSNP Ensembl
Location	chr10:49621173 - 49621173(1)
Variant Alleles	A/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.26877
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000481336, ENST00000490270); intron_variant(ENST00000337653, ENST00000339797, ENST00000351556, ENST00000395559, ENST00000395562, ENST00000460699, ENST00000466590); NMD_transcript_variant(ENST00000466590); non_coding_transcript_variant(ENST00000460699)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Shi, J., 2007	A/T		TDT P-value = 0.76 of Allelic Association With Bipolar Disor...... TDT P-value = 0.76 of Allelic Association With Bipolar Disorder in the Combined Sample More...		Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
CHAT	choline O-acetyltransferase	10q11.2	1(0/1/0)

SNPs in LD with rs10082479 (count: 0) View in gBrowse (chr10:49621173..49621173 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)