SNP Report

Basic Info
Name rs9817739 dbSNP Ensembl
Location chr3:16439320 - 16439320(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.21865
Functional Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript intron_variant(ENST00000334133, ENST00000431547, ENST00000432519, ENST00000441460, ENST00000449415, ENST00000451036, ENST00000453536, ENST00000470458, ENST00000484752); NMD_transcript_variant(ENST00000453536); non_coding_transcript_variant(ENST00000470458, ENST00000484752); upstream_gene_variant(ENST00000495666)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Sklar, P., 2008 T/C CMH (Cochran-Mantel-Haenszel) P-value = 3.47E-05, allelic P-...... CMH (Cochran-Mantel-Haenszel) P-value = 3.47E-05, allelic P-value = 7.26E-05, OR=0.79, pSNP test P-value = 7.30E-05, pHAP test P-value = 7.24E-03, r2=0.28 More... Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
RFTN1 raftlin, lipid raft linker 1 3p24.3 Mapped by Literature SNP

SNPs in LD with rs9817739 (count: 2) View in gBrowse (chr3:16437039..16439320 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)