BDgene

SNP Report

Basic Info
Name rs9322993 dbSNP Ensembl
Location chr14:39136338 - 39136338(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.176518
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000524781, ENST00000529365, ENST00000531684, ENST00000534684); intron_variant(ENST00000250379, ENST00000308317, ENST00000396249, ENST00000412033, ENST00000524980, ENST00000525153); NMD_transcript_variant(ENST00000412033, ENST00000525153); non_coding_transcript_variant(ENST00000524980)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Cichon, S.,2011 T For GWAS, P-value = 0.0000756, OR=1.75, for Replication I, P...... For GWAS, P-value = 0.0000756, OR=1.75, for Replication I, P-value = 0.0382, OR=1.23, for combined sample(GWAS+Replication I), P-value = 0.0000754, OR=1.37 More... No significant association was observed. No significant association was observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GEMIN2 gem (nuclear organelle) associated protein 2 14q21.1 1(0/1/0)

SNPs in LD with rs9322993 (count: 25) View in gBrowse (chr14:39014707..39319478 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 25)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016