SNP Report

Basic Info

Name	rs871167 dbSNP Ensembl
Location	chr15:92090903 - 92090903(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.424321
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000318445, ENST00000424469, ENST00000553653, ENST00000555769, ENST00000556649); non_coding_transcript_variant(ENST00000553653, ENST00000555769, ENST00000556649)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
McAuley, E. Z., 2012	A/G		P-value = 0.034, Empirical P-value = 0.046, OR (95% CI)=1.39...... P-value = 0.034, Empirical P-value = 0.046, OR (95% CI)=1.39 (1.06-1.93) in the Australian bipolar disorder cohort More...	Nominally significant association (P < 0.05) was found with ...... Nominally significant association (P < 0.05) was found with 18 SNPs. Association with 14 of these SNPs held true when empirical P values were obtained through 10, 000 replicate permutations. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SLCO3A1	solute carrier organic anion transporter family, member 3A1	15q26	2(1/1/0)

SNPs in LD with rs871167 (count: 14) View in gBrowse (chr15:92086581..92107033 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs207974	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.878[CEU]
rs1983350	intron_variant; non_coding_transcript_variant	0.952[CEU]
rs2239295	intron_variant; non_coding_transcript_variant	0.878[CEU]
rs207970	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.878[CEU]
rs1517619	intron_variant; non_coding_transcript_variant	0.878[CEU]
rs2892291	intron_variant; non_coding_transcript_variant	1.0[CEU]; 0.911[TSI]
rs1517620	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.836[CEU]
rs207965	intron_variant; non_coding_transcript_variant	0.876[CEU]
rs207971	intron_variant; non_coding_transcript_variant; upstream_gene_variant	0.877[CEU]
rs917355	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.877[CEU]
rs22198	intron_variant; non_coding_transcript_variant	0.918[CEU]
rs7178811	intron_variant; non_coding_transcript_variant	0.882[CEU]; 0.97[TSI]
rs2238362	downstream_gene_variant; intron_variant; non_coding_transcript_variant	0.878[CEU]
rs2238363	intron_variant; non_coding_transcript_variant	0.878[CEU]

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
McAuley, E. Z., 2012	P-value > 0.075	Single SNP analysis did not yield significant evidence for association.	Negative

Overlap with MDD from cross-disorder studies (count: 0)