SNP Report

Basic Info

Name	rs867286 dbSNP Ensembl
Location	chr2:45754891 - 45754891(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.291534
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000306156, ENST00000421201, ENST00000467135, ENST00000476675, ENST00000480453, ENST00000485176, ENST00000497602); non_coding_transcript_variant(ENST00000467135, ENST00000476675, ENST00000480453, ENST00000485176, ENST00000497602)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Graae, L.,2012	A/G		Association analysis: for female, P-value corrected with Bon...... Association analysis: for female, P-value corrected with Bonferroni correction=0.16 More...	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
PRKCE	protein kinase C, epsilon	2p21	1(0/1/0)

SNPs in LD with rs867286 (count: 3) View in gBrowse (chr2:45752971..45755786 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs884399	intron_variant; non_coding_transcript_variant	0.946[CEU]; 1.0[TSI]
rs4953246	intron_variant; non_coding_transcript_variant	1.0[CEU]
rs884401	intron_variant; non_coding_transcript_variant	0.85[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)