BDgene

SNP Report

Basic Info
Name rs867286 dbSNP Ensembl
Location chr2:45754891 - 45754891(1)
Variant Alleles G/A
Ancestral Allele G
Minor Allele A
Minor Allele Frequence 0.291534
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000306156, ENST00000421201, ENST00000467135, ENST00000476675, ENST00000480453, ENST00000485176, ENST00000497602); non_coding_transcript_variant(ENST00000467135, ENST00000476675, ENST00000480453, ENST00000485176, ENST00000497602)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Graae, L.,2012 A/G Association analysis: for female, P-value corrected with Bon...... Association analysis: for female, P-value corrected with Bonferroni correction=0.16 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
PRKCE protein kinase C, epsilon 2p21 1(0/1/0)

SNPs in LD with rs867286 (count: 3) View in gBrowse (chr2:45752971..45755786 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)