BDgene

SNP Report

Basic Info
Name rs8026561 dbSNP Ensembl
Location chr15:92062914 - 92062914(1)
Variant Alleles A/G
Ancestral Allele A
Minor Allele A
Minor Allele Frequence 0.391773
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000318445, ENST00000424469, ENST00000553653, ENST00000555769, ENST00000556649); non_coding_transcript_variant(ENST00000553653, ENST00000555769, ENST00000556649)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Djurovic, S.,2010 Combined analysis: J4for Iceland (replication sample): P-val...... Combined analysis: J4for Iceland (replication sample): P-value = 0.037693, OR=0.85, Stouffer's z value=0.0023 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SLCO3A1 solute carrier organic anion transporter family, member 3A1 15q26 2(1/1/0)

SNPs in LD with rs8026561 (count: 10) View in gBrowse (chr15:92055844..92080115 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016