SNP Report

Basic Info
Name rs7839852 dbSNP Ensembl
Location chr8:28848548 - 28848548(1)
Variant Alleles T/C
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.234425
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000520831); intron_variant(ENST00000416984, ENST00000518510, ENST00000520184, ENST00000520437, ENST00000520983, ENST00000521022, ENST00000521777, ENST00000522363, ENST00000523303, ENST00000523436, ENST00000524081); NMD_transcript_variant(ENST00000518510, ENST00000520437, ENST00000522363, ENST00000523303); non_coding_transcript_variant(ENST00000520983)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Hattori, E.,2009 In GWAS: Allelic P-value = 0.03331, Genotypic P-value = 0.00...... In GWAS: Allelic P-value = 0.03331, Genotypic P-value = 0.00979, Recessive P-value = 0.0041, HWE P-value = 0.17537; in Follow-up study: MAF=0.45, Allelic P-value = 0.00512, Allelic Q-value=0.49274, HWE P-value = 0.23017 More... Significant association was observed in both GWAS and Follow...... Significant association was observed in both GWAS and Follow-up study. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
INTS9 integrator complex subunit 9 8p21.1 1(1/0/0)

SNPs in LD with rs7839852 (count: 21) View in gBrowse (chr8:28782853..28854394 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 21)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)