SNP Report

Basic Info

Name	rs7651261 dbSNP Ensembl
Location	chr3:181305612 - 181305612(1)
Variant Alleles	C/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.414337
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000460739, ENST00000469278, ENST00000493116, ENST00000493521, ENST00000597347, ENST00000626948, ENST00000630482); non_coding_transcript_variant(ENST00000460739, ENST00000469278, ENST00000493116, ENST00000493521, ENST00000597347, ENST00000626948, ENST00000630482)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kuo, P. H., 2014			P-value=0.00018,Â OR=0.6, 95%CI=0.2-0.8 for the second stage P-value=0.00018,Â OR=0.6, 95%CI=0.2-0.8 for the second stage	The marker is identified to be associated with bipolar disor...... The marker is identified to be associated with bipolar disorder in the fine-mapping stage with P-value less than 0.05. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SOX2-OT	SOX2 overlapping transcript	3q26.33	Mapped by Literature SNP

SNPs in LD with rs7651261 (count: 1) View in gBrowse (chr3:181305612..181318431 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs9817763		intron_variant; non_coding_transcript_variant	1.0[CHB]; 0.974[CHD]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)