BDgene

SNP Report

Basic Info
Name rs7553582 dbSNP Ensembl
Location chr1:61358703 - 61358703(1)
Variant Alleles C/T
Ancestral Allele T
Minor Allele C
Minor Allele Frequence 0.193091
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000371184, ENST00000371185, ENST00000371187, ENST00000371189, ENST00000371191, ENST00000403491, ENST00000407417, ENST00000479364, ENST00000482020, ENST00000485903); non_coding_transcript_variant(ENST00000479364)
No. of Studies 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Lee, H. J., 2013 P-value=4.93E-06, Permutated P-value=4.00E-06, OR=0.3662, Co...... P-value=4.93E-06, Permutated P-value=4.00E-06, OR=0.3662, Confidence Interval (CI)=0.22-0.63 More... No genome-wide significant association was found in this stu...... No genome-wide significant association was found in this study. More... Trend

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
NFIA nuclear factor I/A 1p31.3-p31.2 1(0/1/0)
NFIX nuclear factor I/X (CCAAT-binding transcription factor) 19p13.3 4(0/3/1)

SNPs in LD with rs7553582 (count: 0) View in gBrowse (chr1:61358703..61358703 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)