BDgene

SNP Report

Basic Info
Name rs7192086 dbSNP Ensembl
Location chr16:12967754 - 12967754(1)
Variant Alleles T/A
Ancestral Allele A
Minor Allele T
Minor Allele Frequence 0.258187
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000558583)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Schanze, D.,2011 T X2 tests: allele P-value = 0.9 for BP. X2 tests: allele P-value = 0.9 for BP. No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SHISA9 shisa family member 9 16p13.12 1(0/1/0)

SNPs in LD with rs7192086 (count: 3) View in gBrowse (chr16:12940257..12967754 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 3)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Schanze, D.,2011 X2 tests:allele P-value = 0.78 for SCZ. No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016