SNP Report

Basic Info

Name	rs7133178 dbSNP Ensembl
Location	chr12:126732362 - 126732362(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.15655
Functional Annotation	intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	intron_variant(ENST00000537374, ENST00000539315, ENST00000541359); non_coding_transcript_exon_variant(ENST00000540684, ENST00000544499, ENST00000546117); non_coding_transcript_variant(ENST00000537374, ENST00000539315, ENST00000540684, ENST00000541359, ENST00000544499, ENST00000546117); upstream_gene_variant(ENST00000535118)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Kalsi, G., 2006			chi-square P-value = 0.027, X²(1df)=4.9 chi-square P-value = 0.027, X²(1df)=4.9	It produced significant p value that did not need further co...... It produced significant p value that did not need further correction for the presence of multiple alleles in the U.K. cohort More...	Positive

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
LINC00943	long intergenic non-protein coding RNA 943	12q24.32	Mapped by Literature SNP
LINC00944	long intergenic non-protein coding RNA 944	12q24.32	Mapped by Literature SNP

SNPs in LD with rs7133178 (count: 3) View in gBrowse (chr12:126732329..126741489 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs7311054	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs1706510	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]; 1.0[TSI]
rs7304181	intron_variant; non_coding_transcript_variant; upstream_gene_variant	1.0[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)