SNP Report

Basic Info

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Chen, X., 2015	A/T		P-value=1.75E-23,Â OR=0.28, 95%CI=0.22-0.37 P-value=1.75E-23,Â OR=0.28, 95%CI=0.22-0.37	Chromosome 7 associated SNPs and flanking genes for bipolar ...... Chromosome 7 associated SNPs and flanking genes for bipolar disorder (BPD) from Affymetrix Genome-wide Human SNP Array 6.0 in the population of Shandong province of China. More...	Positive

SNP related genes (count: 0)

SNPs in LD with rs6970032 (count: 17) View in gBrowse (chr7:51551916..51605911 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs6966384		0.928[CHB]; 0.951[JPT]
rs13221761		1.0[CHB]; 0.947[JPT]
rs10233972		0.863[CHB]; 0.967[CHD]; 1.0[JPT]
rs4538818	non_coding_transcript_exon_variant; non_coding_transcript_variant	0.863[CHB]; 1.0[JPT]
rs6964366		0.928[CHB]; 0.936[CHD]; 0.951[JPT]
rs7788054		0.863[CHB]; 0.968[CHD]; 1.0[JPT]
rs767259		1.0[CHB]; 0.936[CHD]; 1.0[JPT]
rs10081251		0.806[CHB]; 0.935[CHD]; 0.951[JPT]
rs6967900		0.863[CHB]; 1.0[JPT]
rs4628217	upstream_gene_variant	0.863[CHB]; 0.968[CHD]; 1.0[JPT]
rs10267703		1.0[CHB]; 1.0[CHD]; 1.0[JPT]
rs9791671	upstream_gene_variant	0.863[CHB]; 0.968[CHD]; 1.0[JPT]
rs10260662		0.863[CHB]; 1.0[JPT]
rs6953923		0.863[CHB]; 0.968[CHD]; 1.0[JPT]
rs9692178		1.0[CHB]; 1.0[JPT]
rs10280482		1.0[CHB]; 0.951[JPT]
rs4541850	non_coding_transcript_exon_variant; non_coding_transcript_variant	0.863[CHB]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)