BDgene

SNP Report

Basic Info
Name rs6948482 dbSNP Ensembl
Location chr7:16355809 - 16355809(1)
Variant Alleles T/C
Ancestral Allele C
Minor Allele T
Minor Allele Frequence 0.0850639
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000399310, ENST00000407010)
No. of Studies 1 (Positive: 1; Negative: 0; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Chen, X., 2015 C/T P-value=7.25E-23, OR=0.32, 95%CI=0.26-0.41 P-value=7.25E-23, OR=0.32, 95%CI=0.26-0.41 Chromosome 7 associated SNPs and flanking genes for bipolar ...... Chromosome 7 associated SNPs and flanking genes for bipolar disorder (BPD) from Affymetrix Genome-wide Human SNP Array 6.0 in the population of Shandong province of China. More... Positive

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
ISPD isoprenoid synthase domain containing 7p21.2 Mapped by Literature SNP

SNPs in LD with rs6948482 (count: 17) View in gBrowse (chr7:16278002..16364990 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 17)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)