BDgene

SNP Report

Basic Info
Name rs6554557 dbSNP Ensembl
Location chr4:52621374 - 52621374(1)
Variant Alleles T/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.196286
Functional Annotation downstream_gene_variant; intron_variant; NMD_transcript_variant.
Consequence to Transcript downstream_gene_variant(ENST00000502443, ENST00000506707); intron_variant(ENST00000441222, ENST00000451218, ENST00000503060, ENST00000508499, ENST00000514536); NMD_transcript_variant(ENST00000503060, ENST00000514536)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Kushima, I.,2010 T/G Allele-/genotype wise analyses: X2 test, allele P...... Allele-/genotype wise analyses: X2 test, allele P-value > 0.05; genotype P-value > 0.05 More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
USP46 ubiquitin specific peptidase 46 4q12 1(0/1/0)

SNPs in LD with rs6554557 (count: 51) View in gBrowse (chr4:52553919..52759934 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 51)


Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Kushima, I.,2010 Allele-/genotype wise analyses:X2 test, allele P-value > 0.05;genotype P-value > 0.05 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
To view this website normally, please make sure to allow Flash to run from the local filesystem in the security settings panel.
Last update: March 31, 2016