SNP Report

Basic Info

Name	rs6079501 dbSNP Ensembl
Location	chr20:14589296 - 14589296(1)
Variant Alleles	G/T
Ancestral Allele	T
Minor Allele	G
Minor Allele Frequence	0.310304
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000217246, ENST00000448536, ENST00000463861, ENST00000464883, ENST00000490428, ENST00000497992); non_coding_transcript_variant(ENST00000448536, ENST00000463861, ENST00000464883, ENST00000490428, ENST00000497992)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	YES
Overlap with MDD?	YES

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Huang, J.,2010	G/T		Omnibus GWAS Test: P-value > 5E-05 Omnibus GWAS Test: P-value > 5E-05	No significant association was observed in BD. No significant association was observed in BD.	Negative

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
SEL1L2	sel-1 suppressor of lin-12-like 2 (C. elegans)	20p12.1	1(0/1/0)
MACROD2-IT1	MACROD2 intronic transcript 1	20p12.1	Mapped by Literature SNP
MACROD2	MACRO domain containing 2	20p12.1	2(0/1/1)

SNPs in LD with rs6079501 (count: 0) View in gBrowse (chr20:14589296..14589296 )

Overlap with SZ from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Huang, J.,2010	Omnibus GWAS Test:P-value > 5E-05	No significant association was observed.	Negative

Overlap with MDD from cross-disorder studies (count: 1)

Reference	Statistical Result	Description	Result Category
Huang, J.,2010	Omnibus GWAS Test:P-value > 5E-05	No significant association was observed.	Negative