BDgene

SNP Report

Basic Info
Name rs6079501 dbSNP Ensembl
Location chr20:14589296 - 14589296(1)
Variant Alleles G/T
Ancestral Allele T
Minor Allele G
Minor Allele Frequence 0.310304
Functional Annotation intron_variant; non_coding_transcript_variant.
Consequence to Transcript intron_variant(ENST00000217246, ENST00000448536, ENST00000463861, ENST00000464883, ENST00000490428, ENST00000497992); non_coding_transcript_variant(ENST00000448536, ENST00000463861, ENST00000464883, ENST00000490428, ENST00000497992)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? YES
Overlap with MDD? YES

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Huang, J.,2010 G/T Omnibus GWAS Test: P-value > 5E-05 Omnibus GWAS Test: P-value > 5E-05 No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
SEL1L2 sel-1 suppressor of lin-12-like 2 (C. elegans) 20p12.1 1(0/1/0)
MACROD2-IT1 MACROD2 intronic transcript 1 20p12.1 Mapped by Literature SNP
MACROD2 MACRO domain containing 2 20p12.1 2(0/1/1)

SNPs in LD with rs6079501 (count: 0) View in gBrowse (chr20:14589296..14589296 )

Overlap with SZ from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative

Overlap with MDD from cross-disorder studies (count: 1)
Reference Statistical Result Description Result Category
Huang, J.,2010 Omnibus GWAS Test:P-value > 5E-05 No significant association was observed. Negative