SNP Report

Basic Info

Name	rs582262 dbSNP Ensembl
Location	chr6:6007758 - 6007758(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele	C
Minor Allele Frequence	0.480631
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000244766, ENST00000495850, ENST00000616243, ENST00000622188)
No. of Studies	1 (Positive: 1; Negative: 0; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Fatjo-Vilas, M., 2016	G/C	C	P-value=0.044,Â OR=1.27, 95%CI=1.07-1.49 P-value=0.044,Â OR=1.27, 95%CI=1.07-1.49	SNP1(G allele), SNP4 (C allele) and SNP5 (C allele) were sig...... SNP1(G allele), SNP4 (C allele) and SNP5 (C allele) were significantly more frequent among patients compared to controls. After multiple correction adjustment only the association of SNP5 remained significant. More...	Positive

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
NRN1	neuritin 1	6p25.1	Mapped by Literature SNP

SNPs in LD with rs582262 (count: 1) View in gBrowse (chr6:6007758..6007829 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs582677		upstream_gene_variant	0.901[CEU]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)