SNP Report

Basic Info

Name	rs576026 dbSNP Ensembl
Location	chr9:18733464 - 18733464(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	A
Minor Allele Frequence	0.480032
Functional Annotation	intron_variant; non_coding_transcript_variant.
Consequence to Transcript	intron_variant(ENST00000380548, ENST00000380559); non_coding_transcript_variant(ENST00000380559)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lee, M. T.,2011	A/G		Genome-wide association: in joint analysis, AA vs. AG+GG, P-...... Genome-wide association: in joint analysis, AA vs. AG+GG, P-value = 1.51E-03; genotype , P-value = 0.02476 More...	No significant association was observed. No significant association was observed.	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ADAMTSL1	ADAMTS-like 1	9p21.3	1(0/1/0)

SNPs in LD with rs576026 (count: 2) View in gBrowse (chr9:18718188..18733464 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs1821376		intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.816[JPT]
rs4977341		intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant	0.816[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)