SNP Report

Basic Info

Name	rs539689 dbSNP Ensembl
Location	chrCHR_HSCHR6_MHC_QBL_CTG1:31820049 - 31820049(1)
Variant Alleles	G/C
Ancestral Allele	C
Minor Allele Frequence	0.0
Functional Annotation	synonymous_variant; upstream_gene_variant.
Consequence to Transcript	synonymous_variant(ENST00000375650); upstream_gene_variant(ENST00000375640, ENST00000375641, ENST00000417199, ENST00000450744, ENST00000424962, ENST00000456268, ENST00000391548, ENST00000545241, ENST00000439865, ENST00000444974, ENST00000445736, ENST00000433697, ENST00000450610, ENST00000391555, ENST00000458062, ENST00000400038, ENST00000414536)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Pae, C. U.,2009	G/C		ANOVA: P-value = 0.53 ANOVA: P-value = 0.53	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
C6orf48	chromosome 6 open reading frame 48	6p21.33	Mapped by Literature SNP
HSPA1B	heat shock 70kDa protein 1B	6p21.3	Mapped by Literature SNP

SNPs in LD with rs539689 (count: 0) View in gBrowse (chrCHR_HSCHR6_MHC_QBL_CTG1:31820049..31820049 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)