SNP Report

Basic Info

Name	rs4949455 dbSNP Ensembl
Location	chr1:31649192 - 31649192(1)
Variant Alleles	G/A
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.486621
Functional Annotation	downstream_gene_variant; intron_variant; non_coding_transcript_exon_variant; non_coding_transcript_variant; upstream_gene_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000373672, ENST00000461217, ENST00000488128, ENST00000488897); intron_variant(ENST00000585413, ENST00000585660, ENST00000587445, ENST00000589462, ENST00000591592, ENST00000591929, ENST00000593188, ENST00000607926, ENST00000608246, ENST00000608332, ENST00000608888, ENST00000609033, ENST00000609338, ENST00000609373, ENST00000609549, ENST00000609625, ENST00000610043, ENST00000610216, ENST00000623425, ENST00000623791, ENST00000624388); non_coding_transcript_exon_variant(ENST00000581333); non_coding_transcript_variant(ENST00000581333, ENST00000585413, ENST00000585660, ENST00000587445, ENST00000589462, ENST00000591592, ENST00000591929, ENST00000593188, ENST00000607926, ENST00000608246, ENST00000608332, ENST00000608888, ENST00000609033, ENST00000609338, ENST00000609373, ENST00000609549, ENST00000609625, ENST00000610043, ENST00000610216, ENST00000623425, ENST00000623791, ENST00000624388); upstream_gene_variant(ENST00000373703, ENST00000472443, ENST00000478502, ENST00000489164, ENST00000492061, ENST00000496805)
No. of Studies	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related studies (count: 0)

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
COL16A1	collagen, type XVI, alpha 1	1p35-p34	Mapped by LD-proxy
PEF1	penta-EF-hand domain containing 1	1p34	Mapped by LD-proxy

SNPs in LD with rs4949455 (count: 0) View in gBrowse (chr1:31649192..31649192 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)