BDgene

SNP Report

Basic Info
Name rs4760816 dbSNP Ensembl
Location chr12:71978821 - 71978821(1)
Variant Alleles C/T
Ancestral Allele C
Minor Allele C
Minor Allele Frequence 0.463658
Functional Annotation intron_variant.
Consequence to Transcript intron_variant(ENST00000333850)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Chen, S., 2014 A/G Allele frequency: P-value=0.357523, Permutated P-value=0.808...... Allele frequency: P-value=0.357523, Permutated P-value=0.8082; Genotype frequency: P-value=0.438200, H-W P-value=0.625436(case), H-W P-value=0.439436(control). More... No significant associations were observed. No significant associations were observed. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TPH2 tryptophan hydroxylase 2 12q15 13(10/3/0)

SNPs in LD with rs4760816 (count: 0) View in gBrowse (chr12:71978821..71978821 )

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)