SNP Report

Basic Info

Name	rs4746698 dbSNP Ensembl
Location	chr10:62404264 - 62404264(1)
Variant Alleles	G/A
Ancestral Allele	G
Minor Allele	A
Minor Allele Frequence	0.499002
Functional Annotation	downstream_gene_variant; intron_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000395254, ENST00000466727); intron_variant(ENST00000395255, ENST00000410046)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Anitha, A.,2009	A/G		Fisher's Exact test: Allelic association P-value = 0.033 ; G...... Fisher's Exact test: Allelic association P-value = 0.033 ; Genotypic association P-value = 0.086 More...	rs4746698 showed a marginal deviation from HWE in the bipola...... rs4746698 showed a marginal deviation from HWE in the bipolar group (P-value = 0.033), No significant association was observed. More...	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
ZNF365	zinc finger protein 365	10q21.2	Mapped by Literature SNP

SNPs in LD with rs4746698 (count: 8) View in gBrowse (chr10:62389722..62427805 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Functional Annotation	r²[population]
rs3999112	intron_variant	1.0[CHB]
rs3852425	intron_variant; non_coding_transcript_variant	0.895[CHB]; 0.802[JPT]
rs7089814	intron_variant	1.0[CHB]
rs7904219	intron_variant	1.0[CHB]
rs10995146	intron_variant; non_coding_transcript_variant	0.895[CHB]; 0.802[JPT]
rs10821989	intron_variant; non_coding_transcript_variant	0.853[CHB]; 0.805[JPT]
rs12779590	intron_variant	1.0[CHB]; 0.948[JPT]
rs10995143	intron_variant; non_coding_transcript_variant	0.948[CHB]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)