SNP Report

Basic Info

Name	rs4570625 dbSNP Ensembl
Location	chr12:71938143 - 71938143(1)
Variant Alleles	G/T
Ancestral Allele	T
Minor Allele	T
Minor Allele Frequence	0.352436
Functional Annotation	upstream_gene_variant.
Consequence to Transcript	upstream_gene_variant(ENST00000333850, ENST00000546576)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Lin, Y. M., 2007	T/G		chi-square P-value = 0.45 chi-square P-value = 0.45	this SNP was not associated with the disease this SNP was not associated with the disease	Negative

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
TPH2	tryptophan hydroxylase 2	12q15	13(10/3/0)

SNPs in LD with rs4570625 (count: 2) View in gBrowse (chr12:71936332..71942208 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs10748186		intron_variant; non_coding_transcript_variant	0.829[CHB]; 1.0[JPT]
rs6582071		upstream_gene_variant	1.0[CHB]; 1.0[JPT]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)