SNP Report

Basic Info
Name rs4570625 dbSNP Ensembl
Location chr12:71938143 - 71938143(1)
Variant Alleles G/T
Ancestral Allele T
Minor Allele T
Minor Allele Frequence 0.352436
Functional Annotation upstream_gene_variant.
Consequence to Transcript upstream_gene_variant(ENST00000333850, ENST00000546576)
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Lin, Y. M., 2007 T/G chi-square P-value = 0.45 chi-square P-value = 0.45 this SNP was not associated with the disease this SNP was not associated with the disease Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
TPH2 tryptophan hydroxylase 2 12q15 13(10/3/0)

SNPs in LD with rs4570625 (count: 2) View in gBrowse (chr12:71936332..71942208 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 2)

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)