SNP Report

Basic Info

Name	rs4436830 dbSNP Ensembl
Location	chr17:30056691 - 30056691(1)
Variant Alleles	A/G
Ancestral Allele	A
Minor Allele	G
Minor Allele Frequence	0.0990415
Functional Annotation	downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant.
Consequence to Transcript	downstream_gene_variant(ENST00000384284, ENST00000583250, ENST00000584826, ENST00000590718); intron_variant(ENST00000394835, ENST00000419434, ENST00000423598, ENST00000440741, ENST00000536908, ENST00000581617, ENST00000588978); NMD_transcript_variant(ENST00000423598, ENST00000440741); non_coding_transcript_variant(ENST00000581617)
No. of Studies	1 (Positive: 0; Negative: 1; Trend: 0)
Source	Literature
Overlap with SZ?	NO
Overlap with MDD?	NO

SNP related studies (count: 1)

Reference	Allele Change	Risk Allele	Statistical Values	Author Comments	Result Category
Alaerts, M.,2009	A/G		Allelic association P-value = 0.63; Genotypic association P-...... Allelic association P-value = 0.63; Genotypic association P-value = 0.62 More...	No significant association was observed No significant association was observed	Negative

SNP related genes (count: 3)

Approved Symbol	Approved Name	Location	No. of Studies (Positive/Negative/Trend)
EFCAB5	EF-hand calcium binding domain 5	17q11.2	Mapped by Literature SNP
SLC6A4	solute carrier family 6 (neurotransmitter transporter), member 4	17q11.2	44(18/26/0)
RNY4P13	RNA, Ro-associated Y4 pseudogene 13	17q11.2	Mapped by Literature SNP

SNPs in LD with rs4436830 (count: 1) View in gBrowse (chr17:29956284..30056691 )

The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r²<=0.8.

rs_ID	Literature-origin SNPs with LD	Functional Annotation	r²[population]
rs34625018		intron_variant; NMD_transcript_variant; non_coding_transcript_variant	1.0[CEU]; 1.0[TSI]

Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)