BDgene

SNP Report

Basic Info
Name rs4317369 dbSNP Ensembl
Location chr5:161801368 - 161801368(1)
Variant Alleles A/G
Ancestral Allele G
Minor Allele G
Minor Allele Frequence 0.389377
No. of Studies 1 (Positive: 0; Negative: 1; Trend: 0)
Source Literature
Overlap with SZ? NO
Overlap with MDD? NO

SNP related studies (count: 1)
Reference Allele Change Risk Allele Statistical Values Author Comments Result Category
Yosifova, A.,2011 GWAS P-value = 0.0000309, OR(95%CI)=2.1(1.45-3.04); Replicat...... GWAS P-value = 0.0000309, OR(95%CI)=2.1(1.45-3.04); Replication P-value = 0.629, OR(95%CI)=1.19(0.62-2.30); Mantel-Haenszel P-value = 0.00399, OR(95%CI)=1.51(1.14-2.00) More... No significant association was observed in BD. No significant association was observed in BD. Negative

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Studies (Positive/Negative/Trend)
GABRA1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 5q34 2(1/1/0)

SNPs in LD with rs4317369 (count: 9) View in gBrowse (chr5:161755610..161812447 )
The LD data used here is based on HapMap rel#27. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 9)


Overlap with SZ from cross-disorder studies (count: 0)

Overlap with MDD from cross-disorder studies (count: 0)

Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback Acknowledgements
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Last update: March 31, 2016